Basic Information
Locus ID:
Chr06G033890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 59774497 | 59777772 | - | Chr06G033890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 17 | 188 | 1.3E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 10 | 111 | 9.8E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 113 | 186 | 2.4E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 299 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_004951680.1 | ubiquitin fusion degradation protein 1 homolog [Setaria italica] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9SVF0 | Ubiquitin fusion degradation protein 1 homolog (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51584 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology