Basic Information
Locus ID:
Chr06G033340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 59363419 | 59365703 | - | Chr06G033340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 193 | 237 | 1.19561E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 195 | 238 | 7.4E-5 | IPR018392 |
| Pfam | PF01476 | LysM domain | 132 | 174 | 0.16 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 404 | 631 | 2.0E-35 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 385 | 638 | 1.42E-55 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 193 | 238 | 5.49E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 645 | 1.6E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 192 | 246 | 9.8E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 439 | 2.3E-10 | - |
| SMART | SM00257 | LysM_2 | 194 | 238 | 0.0015 | IPR018392 |
| SMART | SM00257 | LysM_2 | 126 | 174 | 0.52 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 318 | 642 | 29.855967 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 193 | 237 | 10.309489 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025812004.1 | protein LYK5 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology