Basic Information
Locus ID:
Chr06G032980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 59105797 | 59108928 | + | Chr06G032980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 59 | 97 | 8.7E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 478 | 498 | 0.46 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 214 | 237 | 0.0016 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 372 | 394 | 0.65 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 55 | 97 | 3.14E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 338 | 602 | 2.07E-36 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 175 | 412 | 5.49E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 290 | 4.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 445 | 642 | 5.9E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 295 | 444 | 6.7E-20 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 346 | 371 | 9.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 398 | 423 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 505 | 530 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 584 | 609 | 390.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 478 | 503 | 0.067 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 240 | 265 | 0.025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 532 | 557 | 0.13 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 558 | 582 | 0.35 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 214 | 239 | 1.7E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 188 | 213 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 266 | 291 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 452 | 477 | 45.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 63 | 104 | 0.0071 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 372 | 397 | 0.0014 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 159 | 187 | 510.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_025798413.1 | EIN3-binding F-box protein 2-like [Panicum hallii] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VY32 | EIN3-binding F-box protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008956 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology