Basic Information
Locus ID:
Chr06G030160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 56115880 | 56116767 | - | Chr06G030160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 175 | 204 | 6.3E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 210 | 231 | 0.18 | IPR002885 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 5 | 158 | 1.4E-53 | IPR010714 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 115 | 241 | 3.0E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 175 | 207 | 6.4E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 172 | 206 | 9.854266 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_039846101.1 | coatomer subunit alpha-3-like [Panicum virgatum] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0SEP2 | Coatomer subunit alpha OS=Panicum virgatum OX=38727 GN=PVAP13_5KG047500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology