Basic Information
Locus ID:
Chr06G028880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 54500187 | 54504551 | + | Chr06G028880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00139 | Legume lectin domain | 5 | 85 | 3.7E-16 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 88 | 172 | 7.5E-23 | IPR000719 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 5 | 80 | 4.66E-15 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 88 | 173 | 4.1E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 75 | 212 | 1.7E-34 | - |
| SMART | SM00220 | serkin_6 | 1 | 212 | 3.8E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 212 | 20.160044 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 90 | 102 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01550.1 | lectin receptor kinase a4.1. Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. | 0 |
| RefSeq | XP_002465026.2 | L-type lectin-domain containing receptor kinase IV.1 [Sorghum bicolor] | 0 |
| Q9M020 | Lectin-domain containing receptor kinase VI.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1B6QM77 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G315600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G028880, Chr15G020150 |