Basic Information
Locus ID:
Chr06G028270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 53633205 | 53637258 | + | Chr06G028270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 84 | 198 | 1.10954E-33 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 770 | 811 | 1.78981E-21 | - |
| Pfam | PF00069 | Protein kinase domain | 492 | 690 | 7.9E-38 | IPR000719 |
| Pfam | PF04564 | U-box domain | 769 | 825 | 2.7E-12 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 474 | 749 | 1.03E-58 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 57 | 163 | 1.67E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 754 | 825 | 4.24E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 564 | 765 | 4.4E-39 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 766 | 831 | 7.6E-20 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 32 | 164 | 9.5E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 469 | 562 | 4.1E-28 | - |
| SMART | SM00220 | serkin_6 | 491 | 747 | 2.7E-21 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 769 | 833 | 1.5E-15 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 765 | 842 | 17.525097 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 762 | 29.318876 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 609 | 621 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 497 | 518 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 284 | - | - |
| Coils | Coil | Coil | 436 | 463 | - | - |
| Coils | Coil | Coil | 111 | 138 | - | - |
| Coils | Coil | Coil | 359 | 400 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_034572175.1 | U-box domain-containing protein 33-like isoform X1 [Setaria viridis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9V6H1 | E3 ubiquitin ligase OS=Eragrostis curvula OX=38414 GN=EJB05_23483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology