Basic Information
Locus ID:
Chr06G027010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 51256988 | 51268438 | - | Chr06G027010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 261 | 551 | 5.1E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 260 | 553 | 3.34E-78 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 252 | 558 | 1.4E-80 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 252 | 554 | 44.652386 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 497 | 514 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 774 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46740.1 | ubiquitin-specific protease 21. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034571809.1 | ubiquitin carboxyl-terminal hydrolase 20-like isoform X1 [Setaria viridis] | 0 |
| Q9FIQ1 | Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana OX=3702 GN=UBP21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V6M7 | USP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_23266 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2801, BH01.3132, CH01.3379 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G027010, Chr15G018120 |
| Poaceae | Zea mays | 1 | Zm00001eb390390_P002 |