HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Chr06G025820
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000006 49048972 49055280 + Chr06G025820
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 13 66 5.23E-11 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_004960769.1 uncharacterized protein LOC101769844 [Setaria italica] 0
TrEMBL A0A5J9V362 F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21414 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 3 BH05.512, BH05.518, CH05.584
Poaceae Eleusine coracana subsp. coracana 10 gene-QOZ80_2BG0164990, gene-QOZ80_5AG0380930 ...
gene-QOZ80_5AG0385220, gene-QOZ80_5AG0385230, gene-QOZ80_5AG0385330, gene-QOZ80_5AG0385340, gene-QOZ80_5AG0385350, gene-QOZ80_5BG0428070, gene-QOZ80_5BG0432410, gene-QOZ80_5BG0432430
Poaceae Sporobolus alterniflorus 1 Chr06G025820
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.