Basic Information
Locus ID:
Chr06G023850
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 45324353 | 45325162 | + | Chr06G023850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 159 | 200 | 2.26955E-17 | - |
| Pfam | PF13639 | Ring finger domain | 158 | 200 | 3.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 206 | 2.87E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 218 | 2.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 199 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 200 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 232 | - | - |
| Coils | Coil | Coil | 69 | 103 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26800.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051185849.1 | RING-H2 finger protein ATL74-like [Lolium perenne] | 0 |
| Q9LQX2 | E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UT39 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29506 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0428470 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022120, Chr06G023850 |