Basic Information
Locus ID:
Chr06G021060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ubiquitin protein ligase binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 26432214 | 26435900 | + | Chr06G021060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 73 | 192 | 3.5E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 74 | 192 | 2.04E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 63 | 194 | 1.1E-12 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 195 | 270 | 2.1E-19 | - |
| SMART | SM00225 | BTB_4 | 62 | 194 | 0.0017 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 78 | 146 | 8.93767 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_015649704.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0GK73 | BTB domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G020110, Chr06G021060 |