Basic Information
Locus ID:
Chr06G020900
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 26164998 | 26174009 | + | Chr06G020900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 18 | 62 | 2.20777E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 19 | 65 | 7.6E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 73 | 2.05E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 74 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 60 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 61 | 13.344952 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 35 | 44 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004963315.1 | E3 ubiquitin-protein ligase RNF5 isoform X2 [Setaria italica] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9P6X3 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology