Basic Information
Locus ID:
Chr06G020530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 25626294 | 25626830 | - | Chr06G020530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 29 | 178 | 1.96788E-67 | - |
| Pfam | PF00314 | Thaumatin family | 33 | 137 | 3.4E-31 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 26 | 178 | 4.45E-50 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 27 | 178 | 1.9E-47 | IPR037176 |
| SMART | SM00205 | tha2 | 29 | 178 | 3.3E-39 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 147 | 9.7E-42 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 141 | 178 | 0.013 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 26 | 178 | 32.208076 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 82 | 97 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 168 | 177 | 1.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 48 | 57 | 1.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 28 | 40 | 1.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 70 | 81 | 1.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 119 | 135 | 1.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 82 | 111 | 1.3E-37 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_047055594.1 | thaumatin-like pathogenesis-related protein 3 [Lolium rigidum] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WLB1 | Thaumatin-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00162 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology