Basic Information
Locus ID:
Chr06G020520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
thaumatin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 25587843 | 25588952 | - | Chr06G020520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 29 | 177 | 1.87674E-78 | - |
| Pfam | PF00314 | Thaumatin family | 33 | 139 | 9.3E-34 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 26 | 177 | 1.57E-56 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 27 | 177 | 3.2E-52 | IPR037176 |
| SMART | SM00205 | tha2 | 29 | 177 | 2.2E-44 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 152 | 4.3E-47 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 136 | 177 | 0.0031 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 26 | 177 | 35.644432 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 82 | 97 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 119 | 135 | 3.5E-44 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 48 | 57 | 3.5E-44 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 167 | 176 | 3.5E-44 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 70 | 81 | 3.5E-44 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 82 | 111 | 3.5E-44 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 28 | 40 | 3.5E-44 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | NP_001141293.1 | Thaumatin-like pathogenesis-related protein 4 precursor [Zea mays] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WLP6 | Thaumatin-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00167 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology