Basic Information
Locus ID:
Chr06G018460
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 21864572 | 21866663 | + | Chr06G018460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 195 | 237 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 240 | 1.06E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 241 | 5.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 236 | 5.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 237 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 36 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039839962.1 | probable E3 ubiquitin-protein ligase RHY1A [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9SLJ9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00756 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3909, BH05.3935, CH05.4152 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395530, gene-QOZ80_5BG0443860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0439510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001362 |
| Poaceae | Oryza coarctata | 2 | Oco23G009380, Oco24G008940 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g39110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G118900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705446, Pt_Chr0705460 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G018460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G148900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG010980, gene_TRIDC5BG012780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G072600.1, TraesCS5B02G078400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30421 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26027 |