Basic Information
Locus ID:
Chr06G017720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 20723014 | 20730489 | + | Chr06G017720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 122 | 219 | 2.48075E-13 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 487 | 733 | 1.52896E-131 | - |
| Pfam | PF00989 | PAS fold | 110 | 217 | 3.8E-15 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 482 | 733 | 4.2E-68 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 449 | 733 | 1.09E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 108 | 219 | 1.71E-18 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 120 | 224 | 1.4E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 559 | 753 | 2.5E-63 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 474 | 558 | 1.1E-30 | - |
| SMART | SM00220 | serkin_6 | 481 | 741 | 4.3E-60 | IPR000719 |
| SMART | SM00091 | pas_2 | 109 | 176 | 3.5E-9 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 108 | 219 | 2.2E-13 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 481 | 742 | 44.555328 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 107 | 178 | 18.022326 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 600 | 612 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 555 | 568 | 3.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 641 | 651 | 3.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 704 | 726 | 3.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 594 | 612 | 3.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 660 | 682 | 3.2E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 444 | - | - |
| Coils | Coil | Coil | 726 | 746 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_004962762.1 | probable serine/threonine-protein kinase SIS8 isoform X2 [Setaria italica] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z429 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101767428 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology