Basic Information
Locus ID:
Chr06G015980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 18278468 | 18310556 | + | Chr06G015980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 56 | 179 | 2.38821E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 197 | 525 | 1.39855E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 886 | 1095 | 8.3E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 520 | 1.1E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 624 | 876 | 3.4E-77 | IPR024729 |
| Pfam | PF00917 | MATH domain | 61 | 180 | 2.7E-19 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 187 | 9.81E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 548 | 2.75E-97 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 524 | 4.6E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 684 | 801 | 6.3E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 195 | 1.2E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 802 | 899 | 1.5E-27 | - |
| SMART | SM00061 | math_3 | 56 | 160 | 3.5E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 523 | 40.561043 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 38.570854 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 439 | 456 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 56 | - | - |
| Coils | Coil | Coil | 532 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_002442151.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Sorghum bicolor] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | C5YNS5 | ubiquitinyl hydrolase 1 OS=Sorghum bicolor OX=4558 GN=SORBI_3008G098900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology