Basic Information
Locus ID:
Chr06G015110
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 16630626 | 16631790 | + | Chr06G015110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 303 | 1.7E-54 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 324 | 1.13E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 106 | 328 | 1.3E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 105 | 1.0E-16 | - |
| SMART | SM00220 | serkin_6 | 4 | 303 | 6.7E-79 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 303 | 41.686127 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 135 | 147 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025808753.1 | LOW QUALITY PROTEIN: putative cyclin-dependent kinase F-2 [Panicum hallii] | 0 |
| Q2QSL4 | Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1E5VSN1 | Putative cyclin-dependent kinase F-2 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.3339, CH05.3443 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0388590, gene-QOZ80_5BG0435910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0080800.1.CDS1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_009597, gene-QYE76_010077, gene-QYE76_010078 ... |
| Poaceae | Oryza coarctata | 1 | Oco24G005130 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g31050.1, LOC_Os12g23700.1, LOC_Os12g30580.1 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_05G261100, gene-BS78_05G262300 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G015110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G583800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG052830, gene_TRIDC1BG060430 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G359100.1.cds1, TraesCS1B02G375400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb138690_P001 |