Basic Information
Locus ID:
Chr06G013530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 13642175 | 13644310 | + | Chr06G013530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 6.3E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 5.2E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 193 | 250 | 1.7E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 5 | 80 | 6.02E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 191 | 3.53E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 6.02E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 190 | 2.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 217 | 258 | 2.1E-19 | - |
| SMART | SM00184 | ring_2 | 146 | 188 | 3.3E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 24.419825 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 35.050755 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 189 | 11.677863 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology