Basic Information
Locus ID:
Chr06G013250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 13263116 | 13268342 | + | Chr06G013250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 228 | 528 | 1.47775E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 264 | 6.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 491 | 528 | 3.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 7.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 199 | 528 | 3.66E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 529 | 1.5E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 444 | 486 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 440 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 359 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 400 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 529 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 7.3E-9 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 31 | 63 | 8.149503 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 496 | 528 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 314 | 11.233774 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 266 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 496 | 538 | 11.787407 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_025793452.1 | WD repeat-containing protein WDS homolog [Panicum hallii] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V4L7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_22072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology