Basic Information
Locus ID:
Chr06G012330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 11973677 | 11980224 | + | Chr06G012330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 417 | 617 | 6.27994E-107 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1037 | 1257 | 5.90255E-116 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 720 | 1014 | 1.19032E-74 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 104 | 391 | 3.96455E-87 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1056 | 1204 | 1.6E-25 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 435 | 569 | 1.2E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 722 | 965 | 1.6E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 105 | 370 | 2.3E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1029 | 1270 | 4.93E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 716 | 1019 | 1.18E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 413 | 637 | 1.03E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 100 | 399 | 1.26E-28 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1022 | 1275 | 2.8E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 81 | 398 | 9.7E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 683 | 1020 | 3.8E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 399 | 651 | 1.4E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 444 | 617 | 6.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1065 | 1250 | 1.2E-9 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 417 | 640 | 23.182711 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 722 | 1002 | 33.574921 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 103 | 383 | 31.380707 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1039 | 1273 | 17.673868 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 542 | 556 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V2I4 | ABC transporter C family member 3 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology