Basic Information
Locus ID:
Chr06G008440
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 7951888 | 7959134 | - | Chr06G008440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 555 | 599 | 0.00188631 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 14 | 240 | 1.2E-9 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 556 | 596 | 2.61E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 554 | 603 | 6.1E-11 | - |
| SMART | SM00384 | AT_hook_2 | 650 | 662 | 9.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 391 | 403 | 2.3 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 514 | 526 | 23.0 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| Coils | Coil | Coil | 764 | 787 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_025804884.1 | ABC transporter F family member 4-like isoform X2 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GR96 | Tudor domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G304900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology