Basic Information
Locus ID:
Chr06G008410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
to Saccharomyces cerevisiae SAN1 (YDR143C)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 7906912 | 7907721 | + | Chr06G008410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 165 | 207 | 1.27505E-12 | - |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 213 | 4.37E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 214 | 1.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 1.4E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 161 | 215 | 0.0053 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 13.226928 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008678791.3 | E3 ubiquitin-protein ligase MPSR1 [Zea mays] | 0 |
| TrEMBL | A0A1E5VPT6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2577, AH07.2578, BH07.2388, CH07.2462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137240, gene-QOZ80_2BG0192840 |
| Poaceae | Oryza coarctata | 1 | Oco03G015160 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008410, Chr13G007740, Chr15G009920 |
| Poaceae | Zea mays | 2 | Zm00001eb246920_P001, Zm00001eb246930_P001 |