HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Chr06G007550
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: Leucine rich repeat
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000006 7083405 7083815 - Chr06G007550
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13855 Leucine rich repeat 85 135 2.3E-7 IPR001611
Pfam PF13516 Leucine Rich repeat 9 25 0.59 IPR001611
SUPERFAMILY SSF52058 L domain-like 2 135 8.08E-32 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1 136 1.7E-41 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg41083
Apiaceae Apium graveolens 1 Ag7G02197
Asparagaceae Asparagus officinalis 1 AsparagusV1_07.2182.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G30055
Casuarinaceae Casuarina equisetifolia 2 Ceq01G0059, Ceq01G0127
Plantaginaceae Plantago ovata 1 Pov_00013970
Poaceae Sporobolus alterniflorus 1 Chr06G007550
Poaceae Zea mays 2 Zm00001eb046230_P001, Zm00001eb227890_P001
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-24014
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.