halophFGD

Basic Information

Locus ID: Chr06G005710

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Domain of unknown function (DUF4219)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000006	5287328	5288297	+	Chr06G005710

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13961	Domain of unknown function (DUF4219)	39	65	4.5E-9	IPR025314
Pfam	PF14223	gag-polypeptide of LTR copia-type	72	210	4.1E-20	-
Pfam	PF00098	Zinc knuckle	278	293	4.5E-5	IPR001878
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	262	298	1.74E-6	IPR036875
Gene3D	G3DSA:4.10.60.10	-	268	300	7.1E-7	-
SMART	SM00343	c2hcfinal6	278	294	5.1E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	278	294	11.119688	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	235	264	-	-
Coils	Coil	Coil	295	312	-	-
Coils	Coil	Coil	195	215	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039778386.1	uncharacterized protein LOC120645691 [Panicum virgatum]	0
TrEMBL	Q10NF5	Uncharacterized protein OJ1261C08.6 OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1261C08.6 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg13361, jg15643, jg17891, jg20651, jg20653, jg21237, jg4806 ... jg29893, jg30244, jg40961, jg7917
Amaranthaceae	Atriplex hortensis	25	Ah001266, Ah002056, Ah002367, Ah003293, Ah003514, Ah006193 ... Ah007754, Ah008917, Ah008931, Ah010940, Ah011419, Ah013032, Ah013034, Ah013086, Ah017378, Ah017662, Ah024524, Ah030369, Ah030751, Ah031845, Ah032131, Ah032833, Ah036030, Ah036335, Ah037304
Amaranthaceae	Beta vulgaris	2	BVRB_6g146550, BVRB_9g204970
Amaranthaceae	Salicornia bigelovii	63	Sbi_jg10314, Sbi_jg10315, Sbi_jg14770, Sbi_jg15572 ... Sbi_jg16113, Sbi_jg17495, Sbi_jg18226, Sbi_jg18383, Sbi_jg18684, Sbi_jg2476, Sbi_jg2484, Sbi_jg26067, Sbi_jg27117, Sbi_jg27279, Sbi_jg27519, Sbi_jg29264, Sbi_jg31180, Sbi_jg31474, Sbi_jg32229, Sbi_jg32231, Sbi_jg32617, Sbi_jg32736, Sbi_jg32738, Sbi_jg3356, Sbi_jg3631, Sbi_jg36340, Sbi_jg36342, Sbi_jg3640, Sbi_jg36415, Sbi_jg38511, Sbi_jg39647, Sbi_jg40663, Sbi_jg41048, Sbi_jg41140, Sbi_jg41705, Sbi_jg42265, Sbi_jg43733, Sbi_jg44168, Sbi_jg44281, Sbi_jg46359, Sbi_jg47141, Sbi_jg48320, Sbi_jg48400, Sbi_jg48401, Sbi_jg488, Sbi_jg48870, Sbi_jg50195, Sbi_jg504, Sbi_jg51603, Sbi_jg52071, Sbi_jg53653, Sbi_jg53931, Sbi_jg54329, Sbi_jg54331, Sbi_jg5435, Sbi_jg54417, Sbi_jg5783, Sbi_jg5807, Sbi_jg59451, Sbi_jg60873, Sbi_jg6844, Sbi_jg833, Sbi_jg9479
Amaranthaceae	Salicornia europaea	7	Seu_jg10091, Seu_jg12851, Seu_jg12852, Seu_jg13032 ... Seu_jg1954, Seu_jg4106, Seu_jg4146
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00019359, GOSA_00019360
Amaranthaceae	Suaeda glauca	60	Sgl00071, Sgl02644, Sgl03121, Sgl05159, Sgl07802, Sgl12110 ... Sgl13198, Sgl14400, Sgl14705, Sgl15049, Sgl15476, Sgl19869, Sgl20184, Sgl22248, Sgl22634, Sgl22899, Sgl23686, Sgl24889, Sgl27499, Sgl28002, Sgl28883, Sgl30035, Sgl31192, Sgl31497, Sgl32717, Sgl33933, Sgl34016, Sgl35557, Sgl36534, Sgl38007, Sgl39343, Sgl41336, Sgl42598, Sgl43761, Sgl45347, Sgl46145, Sgl47352, Sgl50170, Sgl50844, Sgl59197, Sgl63160, Sgl65214, Sgl65215, Sgl65590, Sgl67774, Sgl69628, Sgl69629, Sgl69892, Sgl73591, Sgl74691, Sgl74883, Sgl78483, Sgl79203, Sgl80081, Sgl80105, Sgl80113, Sgl80978, Sgl81661, Sgl82518, Sgl82550
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000008916, gene:ENSEOMG00000010980 ... gene:ENSEOMG00000022188, gene:ENSEOMG00000022793, gene:ENSEOMG00000028140, gene:ENSEOMG00000028536, gene:ENSEOMG00000047360, gene:ENSEOMG00000050733
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013570, CQ.Regalona.r1.1AG0013580 ... CQ.Regalona.r1.1AG0013990, CQ.Regalona.r1.1AG0021300, CQ.Regalona.r1.3AG0014740, CQ.Regalona.r1.3AG0015200, CQ.Regalona.r1.3BG0004790, CQ.Regalona.r1.3BG0004800, CQ.Regalona.r1.3BG0024610, CQ.Regalona.r1.5BG0012110, CQ.Regalona.r1.6AG0013250, CQ.Regalona.r1.6BG0007010, CQ.Regalona.r1.6BG0012240, CQ.Regalona.r1.8AG0002520, CQ.Regalona.r1.8BG0017840, CQ.Regalona.r1.9AG0018990
Anacardiaceae	Pistacia vera	3	pistato.v30052560, pistato.v30053580, pistato.v30068690
Arecaceae	Phoenix dactylifera	17	gene-LOC103696044, gene-LOC103697381, gene-LOC103699405 ... gene-LOC103700449, gene-LOC103707210, gene-LOC103708097, gene-LOC103716330, gene-LOC120104336, gene-LOC120105803, gene-LOC120107387, gene-LOC120108467, gene-LOC120108505, gene-LOC120108764, gene-LOC120109997, gene-LOC120111184, gene-LOC120112543, gene-LOC120112567
Asteraceae	Flaveria trinervia	64	Ftri10G10254, Ftri10G15470, Ftri11G07203, Ftri11G09554 ... Ftri11G10276, Ftri11G22929, Ftri12G21154, Ftri12G25985, Ftri12G27605, Ftri12G31456, Ftri13G02067, Ftri13G04656, Ftri13G22306, Ftri13G28892, Ftri13G31575, Ftri13G32292, Ftri14G02473, Ftri14G15922, Ftri14G20381, Ftri14G31496, Ftri14G31680, Ftri15G06256, Ftri15G10269, Ftri15G13177, Ftri15G19009, Ftri15G31679, Ftri16G09915, Ftri16G10908, Ftri16G18915, Ftri16G30816, Ftri17G09914, Ftri17G11273, Ftri17G20630, Ftri18G04226, Ftri18G04748, Ftri18G07083, Ftri18G11385, Ftri18G15367, Ftri18G20876, Ftri18G22499, Ftri1G25788, Ftri1G29142, Ftri1G32750, Ftri3G00643, Ftri3G08013, Ftri3G15860, Ftri3G33175, Ftri3G33659, Ftri4G08181, Ftri4G11612, Ftri5G27356, Ftri6G22134, Ftri6G26803, Ftri8G03844, Ftri8G06020, Ftri8G18954, Ftri8G26529, Ftri8G28036, Ftri9G11688, Ftri9G23177, Ftri9G23803, Ftri9G24001, FtriNA12345, FtriNA30702
Brassicaceae	Arabidopsis thaliana	1	AT1G48720.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001863m.g.v1.0, Thhalv10015660m.g.v1.0 ... Thhalv10015996m.g.v1.0, Thhalv10027963m.g.v1.0, Thhalv10028209m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g18990.v2.2, Sp4g04730.v2.2, Sp4g08810.v2.2
Brassicaceae	Brassica nigra	20	BniB01g031300.2N, BniB01g036960.2N, BniB01g042700.2N ... BniB02g014120.2N, BniB02g028290.2N, BniB02g028300.2N, BniB03g033370.2N, BniB03g061610.2N, BniB03g061620.2N, BniB04g056030.2N, BniB05g059210.2N, BniB06g021920.2N, BniB07g035480.2N, BniB07g046360.2N, BniB07g050170.2N, BniB08g014280.2N, BniB08g014290.2N, BniB08g058900.2N, BniB08g061820.2N, BniB08g066580.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2300
Casuarinaceae	Casuarina glauca	1	Cgl03G2438
Dunaliellaceae	Dunaliella salina	1	Dusal.0807s00005.v1.0
Plantaginaceae	Plantago ovata	7	Pov_00010110, Pov_00031149, Pov_00032366, Pov_00034761 ... Pov_00035673, Pov_00036616, Pov_00039562
Plumbaginaceae	Limonium bicolor	5	Lb3G20825, Lb4G21597, Lb5G27056, Lb5G27418, Lb8G36524
Poaceae	Echinochloa crus-galli	57	AH01.109, AH01.1978, AH02.1271, AH02.3898, AH03.2805 ... AH03.762, AH04.1771, AH05.2940, AH05.2990, AH06.1434, AH06.1695, AH06.2795, AH06.803, AH07.1728, AH08.1250, AH08.503, AH09.2111, BH01.1890, BH01.2169, BH01.2953, BH02.2684, BH02.3865, BH02.3866, BH02.4610, BH03.237, BH03.60, BH04.1029, BH05.3326, BH06.1175, BH06.2547, BH08.537, CH01.1300, CH01.2620, CH01.2621, CH01.3147, CH01.5048, CH02.2196, CH02.2560, CH02.3849, CH02.637, CH02.950, CH03.1651, CH03.2085, CH03.493, CH04.2124, CH04.2495, CH04.697, CH05.1617, CH05.334, CH05.3701, CH06.1348, CH06.1985, CH08.1932, CH08.658, CH09.1015, CH09.167, CH09.2745
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0015670.1, HORVU.MOREX.r3.1HG0066750.1 ... HORVU.MOREX.r3.3HG0224470.1.CDS1, HORVU.MOREX.r3.4HG0415120.1, HORVU.MOREX.r3.6HG0547470.1.CDS1, HORVU.MOREX.r3.6HG0587770.1.CDS1
Poaceae	Lolium multiflorum	44	gene-QYE76_000448, gene-QYE76_000804, gene-QYE76_003749 ... gene-QYE76_004316, gene-QYE76_005530, gene-QYE76_005565, gene-QYE76_006936, gene-QYE76_007528, gene-QYE76_013192, gene-QYE76_016518, gene-QYE76_018602, gene-QYE76_018691, gene-QYE76_019173, gene-QYE76_019250, gene-QYE76_024579, gene-QYE76_026001, gene-QYE76_027456, gene-QYE76_035199, gene-QYE76_035200, gene-QYE76_037034, gene-QYE76_038007, gene-QYE76_038229, gene-QYE76_038435, gene-QYE76_038957, gene-QYE76_040943, gene-QYE76_040945, gene-QYE76_042722, gene-QYE76_045406, gene-QYE76_046197, gene-QYE76_049239, gene-QYE76_052452, gene-QYE76_057770, gene-QYE76_057873, gene-QYE76_062537, gene-QYE76_062550, gene-QYE76_062820, gene-QYE76_065276, gene-QYE76_065640, gene-QYE76_065776, gene-QYE76_065986, gene-QYE76_066626, gene-QYE76_068212, gene-QYE76_068229, gene-QYE76_070953
Poaceae	Oryza coarctata	43	Oco02G006660, Oco02G019280, Oco02G019290, Oco03G012810 ... Oco04G008540, Oco04G009570, Oco05G002490, Oco05G011710, Oco06G006680, Oco06G009100, Oco06G015120, Oco06G028080, Oco08G001570, Oco08G001650, Oco09G002940, Oco09G008080, Oco09G012240, Oco10G003770, Oco10G005060, Oco10G005680, Oco10G005850, Oco10G009090, Oco10G009890, Oco11G007440, Oco11G009550, Oco12G013420, Oco13G006170, Oco14G001690, Oco14G003980, Oco15G008330, Oco16G005370, Oco16G005610, Oco17G009110, Oco19G002060, Oco19G004160, Oco20G001270, Oco20G002820, Oco20G002930, Oco20G007810, Oco23G010310, Oco24G003810, Oco24G004580, Oco24G009910
Poaceae	Oryza sativa	1	LOC_Os03g39510.1
Poaceae	Paspalum vaginatum	7	gene-BS78_05G080800, gene-BS78_06G084000, gene-BS78_K193200 ... gene-BS78_06G139100, gene-BS78_10G077500, gene-BS78_10G159700, gene-BS78_K195100
Poaceae	Sporobolus alterniflorus	20	Chr04G017220, Chr05G018240, Chr06G005710, Chr07G019690 ... Chr08G018600, Chr08G024130, Chr09G020220, Chr10G012520, Chr10G015220, Chr11G003510, Chr11G016770, Chr12G022020, Chr13G007230, Chr15G024310, Chr19G006210, Chr20G010480, Chr21G007250, Chr22G009440, Chr25G014610, Chr30G012940
Poaceae	Triticum dicoccoides	1	gene_TRIDC3AG044630
Poaceae	Zoysia japonica	66	nbis-gene-1054, nbis-gene-1055, nbis-gene-1412, nbis-gene-43 ... nbis-gene-14212, nbis-gene-14861, nbis-gene-15427, nbis-gene-15630, nbis-gene-15725, nbis-gene-19460, nbis-gene-21225, nbis-gene-21686, nbis-gene-24518, nbis-gene-24583, nbis-gene-25303, nbis-gene-27514, nbis-gene-27636, nbis-gene-27713, nbis-gene-27714, nbis-gene-27784, nbis-gene-28014, nbis-gene-30414, nbis-gene-32609, nbis-gene-35681, nbis-gene-36558, nbis-gene-36562, nbis-gene-38079, nbis-gene-38613, nbis-gene-39330, nbis-gene-39686, nbis-gene-41331, nbis-gene-42009, nbis-gene-42243, nbis-gene-42273, nbis-gene-42422, nbis-gene-43290, nbis-gene-43294, nbis-gene-43353, nbis-gene-43487, nbis-gene-43488, nbis-gene-44548, nbis-gene-44755, nbis-gene-46470, nbis-gene-46724, nbis-gene-46725, nbis-gene-48654, nbis-gene-48697, nbis-gene-48755, nbis-gene-50850, nbis-gene-53428, nbis-gene-53766, nbis-gene-54142, nbis-gene-54654, nbis-gene-54888, nbis-gene-55264, nbis-gene-55371, nbis-gene-55427, nbis-gene-55505, nbis-gene-55590, nbis-gene-56217, nbis-gene-56276, nbis-gene-57745, nbis-gene-58609, nbis-gene-58832, nbis-gene-59188, nbis-gene-6737
Poaceae	Zoysia macrostachya	11	Zma_g13181, Zma_g19341, Zma_g20910, Zma_g22746, Zma_g22808 ... Zma_g25144, Zma_g3090, Zma_g31622, Zma_g31931, Zma_g32256, Zma_g7840
Posidoniaceae	Posidonia oceanica	11	gene.Posoc01g08260, gene.Posoc01g40100, gene.Posoc02g02430 ... gene.Posoc02g14700, gene.Posoc02g25230, gene.Posoc02g25250, gene.Posoc02g27820, gene.Posoc04g05590, gene.Posoc04g07080, gene.Posoc04g09410, gene.Posoc05g10610
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_11_RagTag.1441 ... evm.TU.Scaffold_11_RagTag.560, evm.TU.Scaffold_16_RagTag.628, evm.TU.Scaffold_17_RagTag.384, evm.TU.Scaffold_17_RagTag.516, evm.TU.Scaffold_2252_RagTag.1, evm.TU.Scaffold_6_RagTag.1532
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-25091, nbisL1-mrna-3597
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20098
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000003l.31, add.evm.TU.utg000008l.273 ... add.evm.TU.utg000008l.299, add.evm.TU.utg000016l.379, add.evm.TU.utg000023l.128, add.evm.TU.utg000027l.87
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16965, nbisL1-mrna-17864
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-24661
Salicaceae	Populus euphratica	1	populus_peu38222
Solanaceae	Lycium barbarum	37	gene-LOC132601360, gene-LOC132601369, gene-LOC132601399 ... gene-LOC132605275, gene-LOC132607982, gene-LOC132608198, gene-LOC132609336, gene-LOC132611095, gene-LOC132612223, gene-LOC132612892, gene-LOC132613204, gene-LOC132613281, gene-LOC132613300, gene-LOC132614321, gene-LOC132617886, gene-LOC132619423, gene-LOC132619628, gene-LOC132620041, gene-LOC132624392, gene-LOC132624443, gene-LOC132628295, gene-LOC132628468, gene-LOC132628808, gene-LOC132630258, gene-LOC132630281, gene-LOC132630362, gene-LOC132637203, gene-LOC132637356, gene-LOC132637498, gene-LOC132637917, gene-LOC132637935, gene-LOC132639253, gene-LOC132639323, gene-LOC132639593, gene-LOC132639739, gene-LOC132643756, gene-LOC132644354
Solanaceae	Solanum chilense	5	SOLCI000138200, SOLCI001482200, SOLCI004090000 ... SOLCI005084300, SOLCI007202000
Solanaceae	Solanum pennellii	25	gene-LOC107001208, gene-LOC107002031, gene-LOC107003809 ... gene-LOC107006531, gene-LOC107009816, gene-LOC107016637, gene-LOC107017310, gene-LOC107019875, gene-LOC107019886, gene-LOC107019897, gene-LOC107021946, gene-LOC107022100, gene-LOC107025078, gene-LOC107027463, gene-LOC107027778, gene-LOC107030006, gene-LOC114074065, gene-LOC114074234, gene-LOC114075084, gene-LOC114076505, gene-LOC114076508, gene-LOC114077138, gene-LOC114077196, gene-LOC114077489, gene-LOC114078100
Tamaricaceae	Reaumuria soongarica	13	STRG.17523_chr09_-, gene_10001, gene_15943, gene_17114 ... gene_17295, gene_2552, gene_3206, gene_3207, gene_3908, gene_6274, gene_7088, gene_861, gene_9907