Basic Information
Locus ID:
Chr06G005580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 5169586 | 5173655 | - | Chr06G005580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 202 | 3.30945E-42 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 799 | 840 | 9.89783E-23 | - |
| Pfam | PF04564 | U-box domain | 795 | 863 | 7.8E-15 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 538 | 683 | 2.8E-29 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 50 | 166 | 3.77E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 793 | 863 | 8.83E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 512 | 765 | 6.74E-55 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 606 | 784 | 4.5E-31 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 39 | 167 | 7.9E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 794 | 865 | 2.7E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 511 | 605 | 8.6E-27 | - |
| SMART | SM00504 | Ubox_2 | 798 | 861 | 2.7E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 794 | 865 | 32.147038 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 533 | 776 | 25.347221 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 651 | 663 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 539 | 560 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 271 | - | - |
| Coils | Coil | Coil | 409 | 446 | - | - |
| Coils | Coil | Coil | 475 | 502 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025801782.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UZR7 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_20324 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology