Basic Information
Locus ID:
Chr06G004630
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 4100023 | 4101361 | - | Chr06G004630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 186 | 5.48505E-60 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 211 | 365 | 2.92303E-73 | - |
| Pfam | PF00190 | Cupin | 209 | 349 | 3.6E-20 | IPR006045 |
| Pfam | PF00190 | Cupin | 17 | 167 | 2.5E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 356 | 1.66E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 204 | 3.0E-29 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 208 | 370 | 1.6E-47 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 13 | 170 | 4.0E-30 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 208 | 352 | 7.9E-13 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 271 | 287 | 2.9E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 224 | 244 | 2.9E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 307 | 325 | 2.9E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 329 | 346 | 2.9E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 289 | 304 | 2.9E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TF64 | 11S seed storage protein OS=Eragrostis curvula OX=38414 GN=EJB05_43444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology