Basic Information
Locus ID:
Chr06G004580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 4065587 | 4068665 | + | Chr06G004580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 65 | 4.1E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 78 | 9.23E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 84 | 9.0E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 4.6E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 11.110626 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 362 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_004953570.1 | binding partner of ACD11 1 [Setaria italica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWW7 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19615 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology