Basic Information
Locus ID:
Chr06G004400
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 3932816 | 3934558 | - | Chr06G004400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 163 | 219 | 2.6E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 268 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 322 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 407 | 7.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 122 | 409 | 8.63E-52 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 410 | 9.8E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 234 | 268 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 407 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 322 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 365 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 233 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 375 | 408 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 203 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 277 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 408 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 394 | 408 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 255 | 269 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_021314547.1 | cell division cycle 20.2, cofactor of APC complex-like [Sorghum bicolor] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UW77 | ANAPC4_WD40 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19631 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology