Basic Information
Locus ID:
Chr06G001370
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Bulb-type mannose-specific lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 1190099 | 1190915 | + | Chr06G001370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 107 | 242 | 1.0E-25 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 107 | 241 | 7.69E-41 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 104 | 162 | 2.1E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 163 | 245 | 6.3E-22 | - |
| SMART | SM00220 | serkin_6 | 92 | 245 | 3.5E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 78 | 246 | 23.509802 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 208 | 220 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35370.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_002454609.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 [Sorghum bicolor] | 0 |
| O65238 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana OX=3702 GN=At5g35370 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4V6DDQ5 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G338866v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.1054.V1.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G001370 |