Basic Information
Locus ID:
Chr06G001210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000006 | 1033028 | 1037768 | - | Chr06G001210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 472 | 541 | 1.5E-12 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 473 | 542 | 8.59E-21 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 49 | 350 | 5.34E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 464 | 547 | 5.5E-21 | - |
| SMART | SM00220 | serkin_6 | 314 | 541 | 1.9E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 237 | 541 | 10.11077 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G08500.1 | MAPK/ERK kinase kinase 1. Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates MEK1. | 0 |
| RefSeq | XP_044964313.1 | F-box/FBD/LRR-repeat protein At5g53840-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q39008 | Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MEKK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I6WXA7 | F-box domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_8AG0626110, gene-QOZ80_8BG0654320 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0112200.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_021187, gene-QYE76_021241, gene-QYE76_038734 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g24370.1 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0305480, Pt_Chr0305481, Pt_Chr0305483, Pt_Chr0305500 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G001210, Chr15G002520, Chr29G001410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G230700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG012690, gene_TRIDC2AG012730 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2D02G106100.1, TraesCS2D02G106500.1.cds1 ... |