Basic Information
Locus ID:
Chr05G034720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 64368802 | 64371171 | - | Chr05G034720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 440 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 355 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 310 | 1.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 440 | 3.25E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 442 | 2.9E-114 | IPR015943 |
| SMART | SM00320 | WD40_4 | 313 | 355 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 398 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 186 | 227 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 267 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 440 | 1.0E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 319 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 310 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 408 | 441 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 408 | 441 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 364 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 427 | 441 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_004971426.1 | protein FIZZY-RELATED 3 [Setaria italica] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | K3XHB8 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101766533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology