Basic Information
Locus ID:
Chr05G032070
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 62456243 | 62458518 | - | Chr05G032070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 363 | 403 | 3.3E-6 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 361 | 408 | 2.44E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 102 | 6.54E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 194 | 284 | 6.15E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 199 | 350 | 1.6E-12 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 351 | 407 | 4.2E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 361 | 403 | 11.092784 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_039812977.1 | F-box protein At1g67340-like [Panicum virgatum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9I3Q9 | MYND-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology