Basic Information
Locus ID:
Chr05G031820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 62283085 | 62283900 | - | Chr05G031820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 223 | 260 | 1.70115E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 222 | 266 | 8.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 267 | 8.25E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 271 | 4.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 223 | 260 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 261 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 214 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | NP_001168025.1 | putative RING zinc finger domain superfamily protein [Zea mays] | 0 |
| TrEMBL | C0HIL5 | RING/U-box superfamily protein OS=Zea mays OX=4577 GN=100381751 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology