Basic Information
Locus ID:
Chr05G031050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 61494767 | 61502380 | - | Chr05G031050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 7 | 257 | 9.6E-107 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 257 | 6.95E-52 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 261 | 316 | 9.03E-6 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 34 | 326 | 6.0E-99 | IPR027417 |
| SMART | SM00382 | AAA_5 | 57 | 219 | 3.7E-4 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 4 | 314 | 1.4E-122 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 35 | 198 | 31.10619 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 192 | 263 | 25.308285 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 204 | 212 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 93 | 122 | 2.4E-67 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 201 | 229 | 2.4E-67 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 234 | 263 | 2.4E-67 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 127 | 156 | 2.4E-67 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 288 | 305 | 2.4E-67 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 165 | 194 | 2.4E-67 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 355 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_004970942.1 | DNA repair protein recA homolog 3, mitochondrial [Setaria italica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9P709 | IDP355 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology