Basic Information
Locus ID:
Chr05G030200
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromatin organization modifier domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 60690529 | 60692296 | - | Chr05G030200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00176 | SNF2 family N-terminal domain | 1 | 197 | 4.7E-39 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 195 | 1.33E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 1 | 197 | 1.7E-62 | IPR038718 |
| SMART | SM00487 | ultradead3 | 1 | 172 | 1.2E-9 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 155 | 17.94079 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 101 | 110 | - | IPR002464 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31900.2 | chromatin remodeling factor, putative. | 0 |
| RefSeq | XP_014754890.1 | CHD3-type chromatin-remodeling factor PICKLE-like [Brachypodium distachyon] | 0 |
| F4JTF6 | CHD3-type chromatin-remodeling factor CHR7 OS=Arabidopsis thaliana OX=3702 GN=CHR7 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9VL82 | Chromo domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_18215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1289.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25110 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4081, BH02.4092, CH02.4119 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0307470.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056785, gene-QYE76_056810 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G357300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600062, Pt_Chr0600096 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G003020, Chr05G030190, Chr05G030200, Chr05G030210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G649400, Tel3E01G649500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG058130, gene_TRIDC3BG065190 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G408500.1, TraesCS3D02G403600.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28559 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11666 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02460 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19470.v3.1 |