Basic Information
Locus ID:
Chr05G030190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromatin organization modifier domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 60687712 | 60690499 | - | Chr05G030190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 53 | 179 | 6.58343E-58 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 55 | 168 | 3.1E-19 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 12 | 234 | 1.28E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 260 | 3.4E-90 | IPR027417 |
| SMART | SM00490 | helicmild6 | 84 | 168 | 8.3E-24 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 58 | 215 | 18.371403 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 357 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06400.1 | chromatin-remodeling protein 11. Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. | 0 |
| RefSeq | XP_025814161.1 | CHD3-type chromatin-remodeling factor PICKLE-like [Panicum hallii] | 0 |
| Q91ZW3 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus OX=10090 GN=Smarca5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7DDN5 | PHD-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G069600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1289.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25110 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4081, BH02.4092, CH02.4119 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0307470.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056785, gene-QYE76_056810 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G357300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600062, Pt_Chr0600096 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G003020, Chr05G030190, Chr05G030200, Chr05G030210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G649400, Tel3E01G649500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG058130, gene_TRIDC3BG065190 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G408500.1, TraesCS3D02G403600.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28559 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11666 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02460 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19470.v3.1 |