Basic Information
Locus ID:
Chr05G029180
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 59595032 | 59609378 | - | Chr05G029180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 268 | 384 | 7.23655E-21 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 537 | 596 | 1.7E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 274 | 384 | 2.5E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 156 | 409 | 1.92E-22 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 534 | 597 | 7.71E-13 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 664 | 738 | 1.57E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 530 | 601 | 1.7E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 155 | 413 | 6.1E-28 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 663 | 731 | 6.7E-7 | - |
| SMART | SM00358 | DRBM_3 | 533 | 597 | 1.4E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 663 | 729 | 0.0011 | IPR014720 |
| SMART | SM00577 | forpap2 | 251 | 393 | 1.6E-8 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 532 | 598 | 11.746893 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 658 | 730 | 11.042881 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 159 | 406 | 17.605581 | IPR004274 |
| Coils | Coil | Coil | 579 | 599 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_004970633.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Setaria italica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | K3XEV5 | protein-serine/threonine phosphatase OS=Setaria italica OX=4555 GN=101764359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology