Basic Information
Locus ID:
Chr05G027830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK13
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 58244716 | 58253997 | + | Chr05G027830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 63 | 321 | 3.41939E-132 | - |
| CDD | cd00051 | EFh | 441 | 503 | 3.19811E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 440 | 503 | 2.2E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 64 | 322 | 1.4E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 368 | 428 | 1.2E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 350 | 528 | 1.1E-44 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 62 | 329 | 2.16E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 330 | 3.4E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 66 | 149 | 4.6E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 331 | 506 | 5.3E-54 | - |
| SMART | SM00220 | serkin_6 | 64 | 322 | 9.3E-94 | IPR000719 |
| SMART | SM00054 | efh_1 | 405 | 433 | 0.67 | IPR002048 |
| SMART | SM00054 | efh_1 | 477 | 505 | 5.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 441 | 469 | 3.2E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 369 | 397 | 4.0E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 365 | 400 | 16.18713 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 401 | 436 | 8.292731 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 437 | 472 | 13.704439 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 473 | 508 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 64 | 322 | 45.996994 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 70 | 93 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 184 | 196 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 378 | 390 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 450 | 462 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 486 | 498 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_004970457.1 | calcium-dependent protein kinase 3 [Setaria italica] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5UKJ6 | Calcium-dependent protein kinase 13 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0025578 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology