Basic Information
Locus ID:
Chr05G025570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 56311697 | 56314171 | - | Chr05G025570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 196 | 482 | 3.0E-94 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 132 | 7.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 117 | 1.26E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 158 | 5.4E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 136 | 0.004 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 196 | 506 | 93.124077 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 11.254053 | IPR000210 |
| Coils | Coil | Coil | 559 | 579 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_034593863.1 | BTB/POZ domain-containing protein At5g03250 [Setaria viridis] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6V0G3 | BTB/POZ domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G344600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology