Basic Information
Locus ID:
Chr05G025530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 56237454 | 56251272 | - | Chr05G025530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 516 | 838 | 7.56522E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 1084 | 1137 | 1.65065E-16 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 534 | 916 | 1.3E-67 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 954 | 991 | 2.3E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 847 | 1132 | 3.15E-20 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 951 | 1002 | 2.91E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 501 | 838 | 1.69E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 581 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 710 | 851 | 7.8E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 853 | 1138 | 7.4E-23 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 948 | 1004 | 1.2E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 608 | 697 | 1.1E-10 | IPR038718 |
| SMART | SM00184 | ring_2 | 954 | 992 | 2.7E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 512 | 817 | 3.5E-30 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 589 | 800 | 12.697098 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 954 | 991 | 10.586141 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 969 | 978 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 733 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_034592714.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria viridis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VFR8 | Helicase ATP-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16749 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology