Basic Information
Locus ID:
Chr05G025350
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 56084326 | 56087326 | - | Chr05G025350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 298 | 424 | 3.02782E-42 | IPR033734 |
| CDD | cd09612 | Jacalin | 108 | 237 | 2.53496E-39 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 108 | 237 | 2.5E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 295 | 424 | 4.9E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 282 | 424 | 3.66E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 93 | 237 | 1.44E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 87 | 237 | 4.8E-46 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 278 | 424 | 6.1E-49 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 108 | 239 | 2.8E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 295 | 425 | 3.2E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 97 | 239 | 46.88456 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 284 | 425 | 49.857765 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_025819306.1 | jacalin-related lectin 3 [Panicum hallii] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VHD9 | Jacalin-type lectin domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16773 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology