Basic Information
Locus ID:
Chr05G024930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NPR1/NIM1 like defence protein C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 55517815 | 55520981 | + | Chr05G024930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18310 | BTB_POZ_NPR_plant | 64 | 207 | 5.36636E-55 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 262 | 344 | 5.2E-10 | IPR020683 |
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 361 | 576 | 3.4E-80 | IPR021094 |
| Pfam | PF00651 | BTB/POZ domain | 69 | 156 | 8.3E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 52 | 205 | 4.24E-13 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 253 | 362 | 4.04E-18 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 43 | 240 | 7.9E-22 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 255 | 393 | 1.6E-20 | IPR036770 |
| SMART | SM00225 | BTB_4 | 68 | 207 | 3.9E-11 | IPR000210 |
| SMART | SM00248 | ANK_2a | 319 | 348 | 0.017 | IPR002110 |
| SMART | SM00248 | ANK_2a | 285 | 315 | 0.045 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 1400.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 319 | 344 | 10.258919 | - |
| ProSiteProfiles | PS50097 | BTB domain profile. | 68 | 157 | 13.777257 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 319 | 351 | 10.55262 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19660.1 | NPR1-like protein 4. Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. | 0 |
| RefSeq | XP_002456404.1 | BTB/POZ domain and ankyrin repeat-containing protein NPR2 [Sorghum bicolor] | 0 |
| Q0JJ01 | BTB/POZ domain and ankyrin repeat-containing protein NPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=NPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VHC3 | BTB domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16858 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20876, jg24099, jg32913, jg37460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015177 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24590, Sbi_jg8451 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28716 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41783, Sgl46585 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30013180, pistato.v30078240, pistato.v30108090 ... |
| Apiaceae | Apium graveolens | 4 | Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1445, Ceq02G2177, Ceq06G0842 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1490, Cgl02G2254, Cgl06G0867 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4692, nbisL1-mrna-5499 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002953, Pov_00031763, Pov_00038621 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14534 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196 |
| Poaceae | Oryza coarctata | 6 | Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G132500, gene-BS78_03G030700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb065420_P002, Zm00001eb121040_P001 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1529, evm.TU.LG07.1191 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21400, gene.Posoc10g09380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1031 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000920 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14853, nbisL1-mrna-14854 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1122, nbisL1-mrna-1123 |
| Salicaceae | Populus euphratica | 5 | populus_peu11921, populus_peu15006, populus_peu29049 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616465, gene-LOC132620290, gene-LOC132621418 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011476, gene-LOC107026249, gene-LOC107026404 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1776 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24130.v3.1, Zosma06g12380.v3.1 |