Basic Information
Locus ID:
Chr05G024860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger A20 and AN1 domain-containing stress-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 55464028 | 55464485 | - | Chr05G024860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01428 | AN1-like Zinc finger | 91 | 116 | 2.4E-9 | IPR000058 |
| Pfam | PF01754 | A20-like zinc finger | 17 | 38 | 8.3E-10 | IPR002653 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 17 | 43 | 1.1E-8 | - |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 89 | 133 | 5.89E-17 | IPR035896 |
| Gene3D | G3DSA:1.20.5.4770 | - | 4 | 61 | 3.4E-12 | - |
| Gene3D | G3DSA:4.10.1110.10 | - | 62 | 122 | 2.1E-13 | IPR035896 |
| SMART | SM00154 | AN1_Zf_4 | 83 | 116 | 4.5E-5 | IPR000058 |
| SMART | SM00259 | A20_3 | 15 | 39 | 5.5E-7 | IPR002653 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 12 | 46 | 8.846684 | IPR002653 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 31 | 119 | 9.632203 | IPR000058 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14225.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_025815336.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 3-like [Panicum hallii] | 0 |
| Q3EA33 | Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana OX=3702 GN=SAP8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9TC80 | AN1-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0034460, gene-QOZ80_1AG0034540 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G024780, Chr05G024860 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11828 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8729 |