Basic Information
Locus ID:
Chr05G024780
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger A20 and AN1 domain-containing stress-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 55410195 | 55411779 | + | Chr05G024780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01428 | AN1-like Zinc finger | 95 | 133 | 1.5E-9 | IPR000058 |
| Pfam | PF01754 | A20-like zinc finger | 16 | 38 | 1.8E-6 | IPR002653 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 17 | 44 | 5.27E-8 | - |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 82 | 150 | 2.88E-22 | IPR035896 |
| Gene3D | G3DSA:4.10.1110.10 | - | 69 | 151 | 3.0E-21 | IPR035896 |
| Gene3D | G3DSA:1.20.5.4770 | - | 4 | 63 | 6.6E-13 | - |
| SMART | SM00259 | A20_3 | 15 | 39 | 7.2E-6 | IPR002653 |
| SMART | SM00154 | AN1_Zf_4 | 95 | 133 | 1.1E-8 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 12 | 46 | 9.117469 | IPR002653 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 92 | 136 | 11.311506 | IPR000058 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025815336.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 3-like [Panicum hallii] | 0 |
| TrEMBL | A0A835E376 | Zinc finger protein OS=Digitaria exilis OX=1010633 GN=HU200_059445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0034460, gene-QOZ80_1AG0034540 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G024780, Chr05G024860 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11828 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8729 |