Basic Information
Locus ID:
Chr05G021370
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 51415752 | 51429317 | - | Chr05G021370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 296 | 424 | 7.3988E-20 | - |
| CDD | cd12108 | Hr-like | 645 | 804 | 7.62678E-29 | - |
| CDD | cd12108 | Hr-like | 39 | 165 | 7.32462E-33 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1115 | 1158 | 8.13039E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 167 | 7.1E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 293 | 425 | 3.0E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1163 | 1220 | 6.5E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 987 | 1062 | 2.7E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 643 | 805 | 1.9E-7 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 980 | 1043 | 3.66E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1114 | 1161 | 3.13E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1053 | 1108 | 3.01E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1111 | 1159 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 640 | 866 | 2.3E-24 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1187 | 1228 | 1.2E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 296 | 443 | 2.8E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 185 | 1.9E-33 | - |
| SMART | SM00184 | ring_2 | 1116 | 1157 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 980 | 1049 | 25.516222 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1052 | 1115 | 30.069431 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1116 | 1157 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 896 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK57 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology