Basic Information
Locus ID:
Chr05G020520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Sad1 / UNC-like C-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 50122467 | 50127428 | - | Chr05G020520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07738 | Sad1 / UNC-like C-terminal | 310 | 448 | 4.3E-41 | IPR012919 |
| Gene3D | G3DSA:2.60.120.260 | - | 257 | 449 | 8.0E-49 | - |
| ProSiteProfiles | PS51469 | SUN domain profile. | 270 | 450 | 36.052773 | IPR012919 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 90 | - | - |
| Coils | Coil | Coil | 202 | 222 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10730.1 | SAD1/UNC-84 domain protein 2. Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730). SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes. AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo. | 0 |
| RefSeq | XP_004951723.1 | SUN domain-containing protein 2 [Setaria italica] | 0 |
| Q9SG79 | SUN domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SUN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WM42 | SUN domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1500 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006672 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg132, Sbi_jg36404 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4430 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014291, GOSA_00014292 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25294, Sgl25309, Sgl25311, Sgl30465 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010851, gene:ENSEOMG00000029108 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013630, CQ.Regalona.r1.4BG0015890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168790 |
| Apiaceae | Apium graveolens | 2 | Ag7G01654, Ag9G00761 |
| Arecaceae | Cocos nucifera | 3 | COCNU_12G005340, scaffold000460G000030 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704994, gene-LOC103713858, gene-LOC103718099 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1720.V1.1, AsparagusV1_05.44.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G29310 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10730.1, AT5G04990.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013430m.g.v1.0, Thhalv10015457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g09060.v2.2, Sp6g37810.v2.2, Sp7g10590.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g029430.2N, BniB07g057430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1572 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1603 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g13520, gene.Cymno18g01550 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09190, gene.Thate06g13220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3125, nbisL1-mrna-3699 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2078 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05595, Lb3G19321, Lb4G21873, Lb4G21876 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.895, AH07.548, BH07.674, CH02.1359, CH07.553 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004430, gene-QOZ80_1AG0027990 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0020270.1, HORVU.MOREX.r3.3HG0255900.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009468, gene-QYE76_052280, gene-QYE76_052347 |
| Poaceae | Oryza coarctata | 4 | Oco01G007450, Oco02G007740, Oco04G006830, Oco10G005520 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g16220.1, LOC_Os05g18770.1, LOC_Os09g29530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G113800, gene-BS78_04G056800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500592, Pt_Chr0603798, Pt_Chr0603878 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G013210, Chr02G026740, Chr03G001460, Chr05G004460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G175300, Tel3E01G319500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG014960, gene_TRIDC1BG015630 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G109200.1, TraesCS1B02G108700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128110_P001, Zm00001eb233650_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24515, nbis-gene-32496, nbis-gene-51704 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g7366, Zma_g8401, Zma_g9689 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1389 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g28700, gene.Posoc07g11070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1116 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3861, nbisL1-mrna-6499 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21098 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.839 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017028 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11024 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13321 |
| Salicaceae | Populus euphratica | 2 | populus_peu06007, populus_peu19873 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645341 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007936 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24472_chr08_-, STRG.31950_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2424, TC06G0712 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15700.v3.1, Zosma06g30720.v3.1 |