Basic Information
Locus ID:
Chr05G017800
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 43825044 | 43825828 | - | Chr05G017800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 168 | 230 | 3.35407E-18 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 112 | 147 | 0.006 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 168 | 229 | 1.1E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 78 | 230 | 2.71E-33 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 67 | 234 | 5.0E-37 | - |
| SMART | SM00054 | efh_1 | 168 | 196 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 125 | 153 | 0.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 116 | 41.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 204 | 232 | 6.9E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 200 | 235 | 12.588623 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 119 | 9.241175 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 121 | 156 | 10.329096 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 164 | 199 | 14.5413 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 177 | 189 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 134 | 146 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 213 | 225 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_039848131.1 | probable calcium-binding protein CML12 [Panicum virgatum] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VEW3 | Calcium-binding protein CML15 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology