Basic Information
Locus ID:
Chr05G016650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 40153988 | 40160608 | + | Chr05G016650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 324 | 484 | 1.9E-32 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 44 | 142 | 1.3E-12 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 170 | 268 | 5.8E-13 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 299 | 491 | 1.62E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 283 | 397 | 2.4E-29 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 154 | 271 | 2.3E-21 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 398 | 492 | 1.8E-22 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 37 | 146 | 3.0E-13 | IPR038408 |
| SMART | SM00220 | serkin_6 | 323 | 487 | 4.3E-7 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 38 | 146 | 15.348286 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 323 | 494 | 28.004414 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 154 | 271 | 17.294487 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 445 | 457 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23230.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 15. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_021311905.1 | cysteine-rich receptor-like protein kinase 25 [Sorghum bicolor] | 0 |
| Q0D5R2 | Cysteine-rich receptor-like protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VFM4 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.2073, CH02.2296, CH07.185 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627900.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G009710, Oco02G010060 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g23970.1, LOC_Os01g38850.1, LOC_Os01g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G157100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G017310, Chr03G009290, Chr05G016650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G685700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG056390, gene_TRIDC6AG056400 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3B02G231200.1, TraesCS6A02G378900.1 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-21510, nbis-gene-29462, nbis-gene-29465 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10423, Zma_g7034, Zma_g8087, Zma_g8088, Zma_g8089 |