Basic Information
Locus ID:
Chr05G014770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 23809610 | 23811885 | - | Chr05G014770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 59 | 131 | 8.1E-13 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 185 | 215 | 1.0E-4 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 215 | 1.03E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 37 | 138 | 8.0E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 167 | 220 | 1.3E-7 | IPR036770 |
| SMART | SM00248 | ANK_2a | 184 | 213 | 1.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 110 | 140 | 5.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 76 | 105 | 0.032 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 110 | 131 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 184 | 213 | 10.895672 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 110 | 131 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 184 | 216 | 11.5676 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 200 | 214 | 8.9E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 111 | 126 | 8.9E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_044971478.1 | probable E3 ubiquitin-protein ligase XBOS33 [Hordeum vulgare subsp. vulgare] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0P0XX10 | Os10g0521600 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0521600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology