Basic Information
Locus ID:
Chr05G013980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 20359363 | 20363087 | + | Chr05G013980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 34 | 200 | 2.59453E-87 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 398 | 580 | 3.25758E-92 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 443 | 568 | 4.3E-17 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 31 | 204 | 8.3E-36 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 233 | 350 | 8.6E-22 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 228 | 375 | 6.31E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 31 | 215 | 3.91E-41 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 398 | 592 | 4.11E-45 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 223 | 385 | 7.5E-44 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 28 | 209 | 2.6E-57 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 391 | 582 | 5.2E-59 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 25 | 592 | 6.2E-212 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_004968281.1 | pyruvate decarboxylase 1 [Setaria italica] | 0 |
| P28516 | Pyruvate decarboxylase 1 OS=Zea mays OX=4577 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0FGK8 | pyruvate decarboxylase OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology